how can I compare two samples of RNA-seq Generally
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3.6 years ago
lkianmehr ▴ 50

Hi

I have a general question. what should I do if I want to compare two samples of RNA-seq generally?

thanks in advance

Leila

RNA-Seq sequence next-gen compare • 1.0k views
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Entering edit mode
3.6 years ago

Quantify the gene/transcripts --> normalize (TPM/TMM/FPKM/RPKM) and do a Spearman's correlation.

If you dont have annotations, use stringtie to assemble transcript structures.

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