Question: Manually creating sub network of protein-protein interaction from STRING
0
gravatar for Santosh
17 months ago by
Santosh0
University of Hyderabad
Santosh0 wrote:

I have PPI data from STRING database with 73 nodes. I am using Cytoscape plugin app MCODE or ClusterONE for network clustering but I am not getting a good cluster PPI network. So, I want to make subnetwork of my PPI network manually by selecting hub gene (gene with higher node degree). Is this possible to make subnetwork manually by selecting hub gene? Please, Can anyone guide me? how can I make subnetwork? I need suggestion.

ADD COMMENTlink written 17 months ago by Santosh0

Sure, just generate the hub scores, use it to filter genes, and then re-create the network with the new hub gene list. As to what this may mean, biologically, I will leave that up to you to decide.

ADD REPLYlink written 17 months ago by Kevin Blighe50k

Thank you Kevin Blighe

ADD REPLYlink written 17 months ago by Santosh0
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