Question: short sequence alignment to short sequence
0
gravatar for xzpgocxx
2.1 years ago by
xzpgocxx0
xzpgocxx0 wrote:

Hi,

I have many short sequences (60bp) and want to alignment to the short reference sequence (also is 60bp) to get the different alignment types. I have to try blast to do this work and output m8 format to get the mismatches and gap value. But It's not enough and I'm interested abundant information.

So, what software can instead the blast to do the alignment?

Thanks.

alignment sequence • 389 views
ADD COMMENTlink written 2.1 years ago by xzpgocxx0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1142 users visited in the last hour