How can I convert BAM data directly to GENOMEDATA ? I guess I could convert BAM data to FASTA data and then FASTA data to GENOMEDATA but I'm afraid that it would greatly increase the conversion time or number of potential bugs.
[Edit : context
I'm trying to use SEGWAY (https://segway.hoffmanlab.org/ , https://www.nature.com/articles/nmeth.1937), an algorithm that requires GENOMEDATA (https://hoffmanlab.org/proj/genomedata/) files as its input. The files I'm trying to process are BAM (https://samtools.github.io/hts-specs/SAMv1.pdf) ones so I need to convert them before I can use SEGWAY.]