Question: falcon unzip output
0
gravatar for rob234king
5 months ago by
rob234king560
UK/Harpenden/Rothamsted Research
rob234king560 wrote:

I have had errors getting falcon unzip to work on a pacbio assembly but believe I have got to an end by launching jobs manually. I had to change one of the scripts as -mum for nucmer was an option when should have been --mum and was causing an error (I did post on github about this).

What I think are the final files are below. The documentation is sparse and don't usually respond to queries. Can anyone confirm this is final for unzip and what the files are?

all_h_ctg_edges
all_h_ctg_ids
all_p_ctg.fa
asm.gfa all_h_ctg.fa
all_p_ctg_edges
all_phased_reads
sg.gfa

pacbio falcon • 289 views
ADD COMMENTlink modified 7 weeks ago by alslonik30 • written 5 months ago by rob234king560
1
gravatar for alslonik
7 weeks ago by
alslonik30
Israel
alslonik30 wrote:

Finally can answer you - after the run has finished successfully: Here is how the unzip folder looks like:

Aug 27 11:07 reads
Aug 27 16:32 0-phasing
Aug 27 23:31 all_phased_reads
Aug 27 23:31 all_h_ctg_ids
Aug 27 23:31 all_p_ctg_edges
Aug 27 23:31 all_h_ctg_edges
Aug 27 23:31 all_p_ctg.fa
Aug 27 23:31 all_h_ctg.fa
Aug 27 23:31 1-hasm

ADD COMMENTlink modified 7 weeks ago • written 7 weeks ago by alslonik30
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