Question: How to perform KaKs_Calculator from SNPEff's output
gravatar for smallfish
2.7 years ago by
smallfish10 wrote:

Hi, all,

I have obtained the annotated SNP (VCF file) by SNPEff. How to calculate ka/ks using KaKs_Calculator or other programs.

rna-seq • 797 views
ADD COMMENTlink written 2.7 years ago by smallfish10
  1. KaKs_Calculator requires sequences in the .axt format not SNPs.
  2. What is the goal of using KaKs_Calculator?
ADD REPLYlink written 2.7 years ago by jean.elbers1.5k
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