Question: SSPACE assembly merger
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gravatar for Elizabeth
11 months ago by
Elizabeth20
Elizabeth20 wrote:

Hello, I'm using SSPACE to merge my pre-assembled sequence files (.fasta format) using BWA (since I am trying to combine sequences from 454 and Illumina). In the output summary document, I see no change in the number of contigs before and after running the program. I'm not sure where am I going on. Thank you.

assembly merger sspace • 283 views
ADD COMMENTlink written 11 months ago by Elizabeth20

Perhaps there is nothing to scaffold based on the data you provided? Do you have reads aligning to 2 different contigs?

ADD REPLYlink written 11 months ago by lieven.sterck4.5k
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