Entering edit mode
5.9 years ago
Elizabeth
▴
30
Hello, I'm using SSPACE to merge my pre-assembled sequence files (.fasta format) using BWA (since I am trying to combine sequences from 454 and Illumina). In the output summary document, I see no change in the number of contigs before and after running the program. I'm not sure where am I going on. Thank you.
Perhaps there is nothing to scaffold based on the data you provided? Do you have reads aligning to 2 different contigs?