Question: software of duplicates in RNA-seq data
0
gravatar for yueli7
2.0 years ago by
yueli7140
China
yueli7140 wrote:

Hello,

I have already used star to mapping all the reads to the human genome.

Which software has the best perform in detecting duplicates in RNA-seq data?

Picard's MarkDuplicates, samtools' rmdup, dupradar or anything else?

Thanks in advance!

rna-seq • 466 views
ADD COMMENTlink modified 2.0 years ago by igor10k • written 2.0 years ago by yueli7140
3
gravatar for igor
2.0 years ago by
igor10k
United States
igor10k wrote:

You can check this previous discussion: Samtools rmdup and Piccard Markduplicates

However, you may not want to remove duplicates: How detrimental are duplicate reads in RNAseq experiments?

ADD COMMENTlink written 2.0 years ago by igor10k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1740 users visited in the last hour