want to pick up the strongest peaks in all the duplicates

Question

[mikysyc2016]

Hi, I have three duplicates for each group, i want to pick up the strongest peaks in all duplicates. Can you recommend software which can do this things? Thanks!

[tiago211287]

Have you already called your peaks? You can Use MACS2 for peak calling. To only then, choose strong peak signals. I would also use deeptools to access Chip-Seq Sequencing quality and statistics.

[mikysyc2016]

Thank you for your reply. I already use MACS2, i will check deeptools.