I was trying to install Augustus in Ubuntu 16.04. However I have followed (http://bioinf.uni-greifswald.de/augustus/binaries/README.TXT) for installation but stuck in between the steps,
-htslib -bcftools -tabix -samtools For bam2wig, these four packages must be installed from github. An installation via Ubuntu packages is not sufficient. See detailed installation & compilation instructions at auxprogs/bam2wig/README.TXT Also, the environment variable TOOLDIR (directory in which htslib, bcftools, tabix and samtools reside) must be exported:
Compiling utrrnaseq requires Boost library >Boost_1_49_0. For Ubuntu e.g. install with
sudo apt-get install libboost-all-dev
bam2wig.c:18:17: fatal error: sam.h: No such file or directory compilation terminated. Makefile:33: recipe for target 'bam2wig.o' failed make: *** [bam2wig.o] Error 1 make: Leaving directory '/home/ub/softwares/augustus-3.3.1/auxprogs/bam2wig' Makefile:7: recipe for target 'all' failed make: *** [all] Error 2 make: Leaving directory '/home/ub/softwares/augustus-3.3.1/auxprogs' Makefile:7: recipe for target 'all' failed make: *** [all] Error 2
Hoping for good suggestion.