Question: Selection of RNA-Seq appropriate tools for meta-analysis
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Sitara • 0 wrote:
Hello all,
I am running a meta-analysis with publicly available RNA-seq data, containing multiple samples which have approximately 5000 replicates each. I want to compare these samples and get the top genes which are up-regulated and down-regulated.
Can someone suggest me Which combination of tools from the below will be appropriate?
Hisat-StringTie-Ballgown
Hisat-HTseq-DESeq
STAR-HTseq-DESeq
Any other suggession will be appreciated.
Thanks in advance.
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modified 2.6 years ago
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Devon Ryan ♦ 98k
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written
2.6 years ago by
Sitara • 0