Closed:Box plot for single gene expression for various samples in a given condition ( male/female)
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5.8 years ago
vkgaur25 ▴ 30

Hi All

Can some help me with box plot? I used DESeq2 for DE analysis and now I want to plot box plots for some most highly DE genes. Since I am trying to see the difference of expression in sex (male/female) , I want box plot where there are two box plots for same gene in two condition (male/female) that could show the read counts on Y axis considering all samples (48 samples).Something like this-

[https://ibb.co/jJrfpo][1]

I have a count table produced from DESeq2 and I have a 'coldata' which has annotation details (male/female) for all the samples.

RNA-Seq • 577 views
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