Question: run_BUSCO.py running problem in UBUNTU-16.04?
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gravatar for kabir.deb0353
15 months ago by
kabir.deb03530 wrote:

I have installed BUSCO in my Ubuntu 16.04, according to the manual but when I run run_BUSCO.py it was showing

line 26, in <module> from pipebricks.PipeLogger import PipeLogger ModuleNotFoundError: No module named 'pipebricks'

What should I do for solving this problem?

busco pipebricks • 1.1k views
ADD COMMENTlink written 15 months ago by kabir.deb03530

See if this is applicable: https://gitlab.com/ezlab/busco/issues/27

ADD REPLYlink written 15 months ago by genomax71k

Thank yo so much @genomax for your suggestion, but now I'm stuck in the new problem, I was running BUSCO

Command Line:

python3 run_BUSCO.py --in ../sample_data/target.fa --out TEST --lineage_path ../sample_data/example --mode genome

Error Message:

INFO    ****************** Start a BUSCO 3.0.2 analysis, current time: 06/29/2018 22:55:58 ******************
INFO    Configuration loaded from /home/ub/softwares/BUSCO/scripts/../config/config.ini
INFO    Init tools...
INFO    Check dependencies...
ERROR   "augustus" is not accessible, check its path in the config.ini file (do not include the commmand in the path !), and add it to your $PATH environmental variable (the entry in config.ini is not sufficient for retraining to work properly)
ERROR   BUSCO analysis failed !
ERROR   Check the logs, read the user guide, if you still need technical support, then please contact mailto:support@orthodb.org

Thanks in advance.

ADD REPLYlink written 15 months ago by kabir.deb03530

Where is the program augustus on your computer? Are you able to locate it by which -a augustus? If you see it then add it to your $PATH by doing export PATH=$PATH:/path_to_augustus.

ADD REPLYlink written 15 months ago by genomax71k
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