Question: Can I combine Blastp and interproscan results for GO annotation in blast2go
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gravatar for aishu.jp
2.0 years ago by
aishu.jp10
aishu.jp10 wrote:

I have local Blastp results of 10000 protein sequences as xml files and I have completed interproscan analysis using the gene sequences of the same 10000 proteins in Blast2go.

My query is Can I load the Blastp xml files and interproscan results in Blast2go for mapping and GO annotation in Blast2go?

interpro scan blastp blast2go • 893 views
ADD COMMENTlink written 2.0 years ago by aishu.jp10
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gravatar for lieven.sterck
2.0 years ago by
lieven.sterck7.9k
VIB, Ghent, Belgium
lieven.sterck7.9k wrote:

as long as the blastP xml output is compliant with what blast2GO expects and you blasted against a supported blast2GO DB (uniprot?) it should work yes

ADD COMMENTlink written 2.0 years ago by lieven.sterck7.9k
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