Can I combine Blastp and interproscan results for GO annotation in blast2go
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3.4 years ago
aishu.jp ▴ 10

I have local Blastp results of 10000 protein sequences as xml files and I have completed interproscan analysis using the gene sequences of the same 10000 proteins in Blast2go.

My query is Can I load the Blastp xml files and interproscan results in Blast2go for mapping and GO annotation in Blast2go?

blast2go blastp interpro scan • 1.5k views
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3.4 years ago

as long as the blastP xml output is compliant with what blast2GO expects and you blasted against a supported blast2GO DB (uniprot?) it should work yes

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