Question: Breast cancer claudin low subtyping with genefu
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gravatar for vale.andri
2.3 years ago by
vale.andri0
vale.andri0 wrote:

Hi everybody, I used genefu package to obtain the PAM50 subtype classification of TCGA breast cancer samples. I would like to add the claudin-low classification and I tried with the sbt.model ="claudinLow" parameter but, using the same matrix as for the pam50, it does not work.

my_claudin<-molecular.subtyping(sbt.model = c("claudinLow"), data=expMatt, annot=annot, do.mapping = T)
Error in data1[, gg.uniq, drop = FALSE] : subscript out of bonds

Can anyone give me advices? I am desperate. Thank you

rna-seq R • 754 views
ADD COMMENTlink modified 2.3 years ago by genomax91k • written 2.3 years ago by vale.andri0
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