Question: Alternatives to WGCNA?
2
gravatar for as.mac
2.3 years ago by
as.mac20
as.mac20 wrote:

What are alternative R packages to obtain gene co-expression modules, similar to WGCNA? I want to verify that the modules obtained by WGCNA are reproducible using an independent method.

Alternative, do you have any suggestions to test the reproducibility of the modules?

Thanks

ADD COMMENTlink modified 2.3 years ago by Kevin Blighe66k • written 2.3 years ago by as.mac20
2
gravatar for Kevin Blighe
2.3 years ago by
Kevin Blighe66k
Kevin Blighe66k wrote:

Please take a look at my tutorial: Network plot from expression data in R using igraph

The final 'communities' that I identify are akin to the modules in WGCNA.

Kevin

ADD COMMENTlink written 2.3 years ago by Kevin Blighe66k
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