Question: How to Get only one annotation with the SnpEff annotation?
0
mhmtgenc85 • 40 wrote:
Dear All,
As you know when annotationg a vcf file each line might have more than one annotation but I would like to get only one annotation for a line? the first one only if possible.
So thanks in advance.
ADD COMMENT
• link
•
modified 2.6 years ago
by
Pierre Lindenbaum ♦ 134k
•
written
2.6 years ago by
mhmtgenc85 • 40
a variant can overlap multiple transcripts with different consequences; So why would you want to do this ?
Yeah you are right but for some reason I only would like to get only the first annotation. :)