Question: Buffer Overflow with GSNAP
0
gravatar for noahaus
7 months ago by
noahaus10
noahaus10 wrote:

I'm trying to align fastq reads to a genome using the gsnap suite of tools, but I encounter an error everytime I try to run the command:

   *** buffer overflow detected ***: gsnap terminated
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f4988c2f7e5]
/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7f4988cd115c]
/lib/x86_64-linux-gnu/libc.so.6(+0x117160)[0x7f4988ccf160]
/lib/x86_64-linux-gnu/libc.so.6(+0x1166c9)[0x7f4988cce6c9]
/lib/x86_64-linux-gnu/libc.so.6(_IO_default_xsputn+0x80)[0x7f4988c336b0]
/lib/x86_64-linux-gnu/libc.so.6(_IO_vfprintf+0x139b)[0x7f4988c0650b]
/lib/x86_64-linux-gnu/libc.so.6(__vsprintf_chk+0x84)[0x7f4988cce754]
/lib/x86_64-linux-gnu/libc.so.6(__sprintf_chk+0x7d)[0x7f4988cce6ad]

...

Has anyone ever encountered this error, and if so how can I fix it in order to have it run? Any assistance would be appreciated.

rna-seq unix alignment • 179 views
ADD COMMENTlink modified 7 months ago by genomax62k • written 7 months ago by noahaus10
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