I have been analyzing RNA-Seq data and recently was requested to provide Adapter metrics. I am not sure if there are any tools out there that can determine the Adapter metrics. And also how this metrics is calculated. I normally trim the adapter sequence before the analysis.
Any help in identifying how this is calculated is appreciated. Google searches using various combinations returned nothing, except for one instance where : Adapter <.03, From RNA-SeQC v1.1.9 stats was mentioned in a xls document.
I have gone through RNA-SeQC v1.1.9 but do not see the metric.
Thank you, thekid