Question: Software for genome coordinates from alignment
gravatar for tim.ivanov.92
7 months ago by
tim.ivanov.9210 wrote:

Is there a package/software (preferably python) for coordinate conversation from alignment to genome?

For example i've done tblastx of a reference protein and obtained a number of alignments. Is it possible now to easily do any of these things:

1). Get coordinates of specific exons from reference protein, inside all my alignments?

2). Get genomic coordinates inside target organism (whichever it) is of these exons?

alignment gene genome • 271 views
ADD COMMENTlink modified 5 months ago by Biostar ♦♦ 20 • written 7 months ago by tim.ivanov.9210
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2488 users visited in the last hour