Question: Error downloading MuSiC2
0
gravatar for banerjeeshayantan
10 weeks ago by
banerjeeshayantan70 wrote:

I am following all the steps that are required to install music2. I am trying to download calcRoiCovg in one of the steps. I have followed all the instructions previously, but I am getting the following error.

    gcc -g -Wall -fopenmp -O2 -Idata/shayantan/samtools/ calcRoiCovg.c -o calcRoiCovg -Ldata/shayantan/samtools/ -lbam -lm -lz -lpthread In file included from calcRoiCovg.c:21:0:  calcRoiCovg.h:22:17: fatal error: sam.h: No such file or directory  #include "sam.h"    ^   compilation terminated.   make: *** [all] Error 1

I have made sure that sam.h file is inside samtools and htslib. But still I get an error. Any suggestions to remedy this will help me a lot! I am stuck with this problem for a long time.

ADD COMMENTlink modified 10 weeks ago by genomax57k • written 10 weeks ago by banerjeeshayantan70
0
gravatar for genomax
10 weeks ago by
genomax57k
United States
genomax57k wrote:

That is not an error with downloading MuSiC2 but a problem with compilation. You need to make sure that you have the directory containing samtools and htslib added to your $PATH.

export PATH=$PATH:/directory_with_samtools

ADD COMMENTlink written 10 weeks ago by genomax57k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 734 users visited in the last hour