Hi every one
I used CNVnator to get a CNV list for each patient sample using exome (not sure if ok) and whole genome whatever I have. I pick those with ev2 <0.05 from CNVnator.
Then I use the genome browser to find the genes that map to these CNVs intervals, and also find out if these CNVs overlap with pathogenic CNVs or not. Then I pick the genes that overlap with my CNVs and pathogenic CNVs and see if those genes could be related to the phenotype I am studying.
Is this wrong? Any helpful reference or suggestions are welcome as it is my first time.