Understanding output of GARLIC: Genomic Autozygosity Regions Likelihood-based Inference and Classification tool
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I am trying to find ROH using GARLIC tool. Szpiech, Z. A., Blant, A., & Pemberton, T. J. (2017). GARLIC: genomic Autozygosity regions likelihood-based inference and classification. Bioinformatics, 33(13), 2059-2062. my output is shown below. i am not sure about result and also m not been able to understand the output as well. if someone could help me plz. file name was testfile.roh.bed output Image

track name="Ind: S_Brahui-1 Pop:0 ROH" description="Ind: S_Brahui-1 Pop:0 ROH from GARLIC v1.1.6" visibility=2 itemRgb="On"

chr10 7525185 7536307 A 11123 . 0 0 228,26,28

chr10 10046559 10072687 A 26129 . 0 0 228,26,28

chr10 14028086 14040567 A 12482 . 0 0 228,26,28

chr10 14094611 14126189 A 31579 . 0 0 228,26,28

chr10 16208428 16286319 A 77892 . 0 0 228,26,28

chr10 23768713 23795199 A 26487 . 0 0 228,26,28

chr10 27876538 27936730 A 60193 . 0 0 228,26,28

chr10 27980562 28081917 B 101356 . 0 0 77,175,74

chr10 28181307 28265144 A 83838 . 0 0 228,26,28

chr10 31104873 31211952 B 107080 . 0 0 77,175,74

roh genomics population genomics • 638 views
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