Entering edit mode
5.7 years ago
modarzi
▴
170
Hi,
After Batch corection through TCGA batch effect ewbsite, I downloaded corrected RNA-seq data. when I look at this data, the ID of first few genes are strange. does anybody knows why?
gene
?|100130426
?|100133144
?|100134869
?|10357
?|10431
?|136542
?|155060
?|26823
?|280660
?|317712
?|340602
?|388795
?|390284
?|391343
?|391714
?|404770
?|441362
?|442388
?|553137
?|57714
?|645851
?|652919
?|653553
?|728045
?|728603
?|728788
?|729884
?|8225
?|90288
Dear Dr. Blighe
Hello,
Thanks for your comment. Now, what should I do with these genes? can I use them in my analysis or have I to delete them? I appreciate if you share your comment with me.
Best Regards,
Moha
Most of them likely have had official gene symbols assigned since the TCGA project. You can look up each of them and assign them their new name.