I have a genome of a species, which I have annotated in house. The N50 for this genome is around 41,000.
I have another, better genome, of the same species, which I have also annotated in house. The N50 for this is 4,000,000.
I suspect my poorer genome has split and incomplete transcripts, which gets resolved with my better genome.
Does anyone have any tips on how I can find this split instances that are resolved with the better genome?