**120**wrote:

Hi all,

I have with me now a group of about 20 SNPs that I would like to acquire all possible genotype combinations for. As an example, let's start off with three SNPs and their alleles.

```
SNP A1 A2
SNP1 A T
SNP2 C G
SNP3 T A
```

I want to start off by generating a list of all possible genotype permutations/combinations of these three SNPs, for example:

```
SNP1 SNP2 SNP3
AA CC TT
AA CC TA
AA CC AA
AA CG TT
AA CG TA
AA CG AA
AA GG TT
AA GG TA
AA GG AA
...
```

And so on, for what I expect to be 3^3 = 27 possible combinations.

From here, I hope to scale this up to my full group of ~20 SNPs. What is a good way of doing this, in Python or even in R?

**800**• written 2.2 years ago by Volka •

**120**