Question: samtools fastq compression
18 months ago by
bsmith030465 • 150
bsmith030465 • 150 wrote:
I was trying to convert a cram file to two paired end fastq.gz files using the samtools command:
samtools fastq -c -@2 -1 Sample_R1.fastq.gz -2 Sample_R2.fastq.gz Sample.cram
I'm not sure if I am giving the right command for compression, since the .gz file is huge. Does this command look ok?
ADD COMMENT • link •