Question: How can I allow to hetro and missing genotype in ROH detection?
gravatar for mary
5 months ago by
Bologna university
mary200 wrote:


I study about ROH in some sheep breed. I want to found ROH in 1-3, 3-6, 6-12, 12-18, >18 category. for long ROH I need to correction for missing and hetro genotype. for example:

I need to allow one hetrozygot and 3 missing genotype on ROH segment with more than 16 Mb lenght. dose any body know how can I do this ?

I use following command:

plink --homoyg-snp 40 --homoyg-gap 1000 --homoyg-window-snp 50 --homoyg-density 100
hetro plink roh missing • 167 views
ADD COMMENTlink modified 5 months ago by zx87546.8k • written 5 months ago by mary200
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