Question: How to filter variants called within n base pairs of each other
1
phongphak.06 • 10 wrote:
I've filtered variants based on quality and depth using bcftools, but I also want to filter them that were called within 5 base pairs of each other. Is there any tools that can do this?
Example
Before filter:
1 153489 A T
1 154895 C T
1 154898 G C
1 157355 C A
After filter:
1 153489 A T
1 157355 C A
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modified 2.4 years ago
by
Pierre Lindenbaum ♦ 134k
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written
2.4 years ago by
phongphak.06 • 10