I haven't been able to properly install bedtools with Cygwin (Win 7), base off of the native instructions.
I searched online and found that it might be usefull to reinstall Cygwin with a few extra packages.
I've done so and re-attempted
make clean, and then
make, but no cigar.
make > SaveOutputToFile.txt
File content is attached.
How could I fix this?
Building BEDTools: ========================================================= DETECTED_VERSION = v2.27.0 CURRENT_VERSION = Updating version file. * Creating BamTools API - Building in src/utils/FileRecordTools * compiling FileRecordMgr.cpp * compiling FileRecordMergeMgr.cpp - Building in FileReaders * compiling FileReader.cpp * compiling SingleLineDelimTextFileReader.cpp * compiling BamFileReader.cpp * compiling BufferedStreamMgr.cpp * compiling InputStreamMgr.cpp - Building in Records * compiling Record.cpp * compiling EmptyRecord.cpp * compiling Bed3Interval.cpp * compiling Bed4Interval.cpp * compiling BedGraphInterval.cpp * compiling Bed5Interval.cpp * compiling Bed6Interval.cpp * compiling PlusFields.cpp * compiling BedPlusInterval.cpp * compiling Bed12Interval.cpp * compiling BamRecord.cpp * compiling GffRecord.cpp * compiling GffPlusRecord.cpp * compiling VcfRecord.cpp * compiling NoPosPlusRecord.cpp * compiling BlockMgr.cpp * compiling StrandQueue.cpp * compiling RecordMgr.cpp * compiling RecordList.cpp * compiling RecordKeyList.cpp * compiling RecordKeyVector.cpp - Building in src/utils/FileRecordTools/FileReaders make: Nothing to be done for 'all'. - Building in src/utils/FileRecordTools/Records make: Nothing to be done for 'all'. - Building in src/utils/bedFile * compiling bedFile.cpp - Building in src/utils/BinTree * compiling BinTree.cpp - Building in src/utils/version * compiling version.cpp - Building in src/utils/bedGraphFile * compiling bedGraphFile.cpp - Building in src/utils/chromsweep * compiling chromsweep.cpp - Building in src/utils/Contexts * compiling ContextBase.cpp Makefile:38: recipe for target '../../../obj//ContextBase.o' failed Makefile:186: recipe for target 'src/utils/Contexts' failed