Question: Problem running MAFFT
gravatar for printingdots
2.1 years ago by
printingdots0 wrote:

I'm trying to run MAFFT for aligning sequences in .fasta format. I'm working on Ubuntu and using MAFFT version 7.407.

I got MAFFT running on a set of 100 sequences but it's giving me the following error on 500 sequences:

Allocation error ( 3448 x 3448 doublemtx )

I'm running MAFFT using the options --localpair --maxiterate 16 --phylipout --inputorder

Could anyone please help me out as I'm pretty new to this?

sequence alignment • 1.1k views
ADD COMMENTlink written 2.1 years ago by printingdots0

You are probably running out of memory. See the tips page for suggestions on how to handle big datasets.

ADD REPLYlink written 2.1 years ago by h.mon31k
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