Question: Problem running MAFFT
0
gravatar for printingdots
2.1 years ago by
printingdots0 wrote:

I'm trying to run MAFFT for aligning sequences in .fasta format. I'm working on Ubuntu and using MAFFT version 7.407.

I got MAFFT running on a set of 100 sequences but it's giving me the following error on 500 sequences:

Allocation error ( 3448 x 3448 doublemtx )

I'm running MAFFT using the options --localpair --maxiterate 16 --phylipout --inputorder

Could anyone please help me out as I'm pretty new to this?

sequence alignment • 1.1k views
ADD COMMENTlink written 2.1 years ago by printingdots0
1

You are probably running out of memory. See the tips page for suggestions on how to handle big datasets.

ADD REPLYlink written 2.1 years ago by h.mon31k
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