How can I convert genome coordinations from one genome version to another using ChIPseeker?

Question

[kouichi.webuse]

I would like to compare ChIP-seq results built from different genome versions of the same species (i.e. galGal4, Gallus_gallus-5.0) using ChIPseeker but I couldn't find anything related to converting the genome coordinations from one genome version to another in its pdf documentation as this is stated as supported feature on the webpage. Does anyone has experience with this? How do I convert the coordinations from one genome version to another or what command I should use to do the comparison without converting the coordinations first? Thank you very much.

[ATpoint]

Check section 9.3 of the manual. For anything else, I would go for liftOver.