It´s my first time doing RNA-Seq. I performed differential expression analysis using DESeq2 and now I want to do gene ontology analysis with my data to be able to see the differences between the two groups (control and treatment).
I tried it using goseq but this gives me only one output for everything combined. What I want is to perform a GO analysis for my control group and for my treatment group so I can compare them with each other. Does anyone have an idea?
I would appreciate any help.