Question: mm10 phyloP download for custom tracks
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gravatar for rbronste
2.1 years ago by
rbronste360
rbronste360 wrote:

Im trying to find/download the phyloP information so I can use it in some custom track display tools, however most of the files (bigwig) on UCSC are many gb in size, wondering if there is another file type good for displaying the base wise conservation external to UCSC?

ucsc phylop conservation • 742 views
ADD COMMENTlink modified 2.0 years ago by Biostar ♦♦ 20 • written 2.1 years ago by rbronste360
2

May be you can use per-chromosome files that UCSC provides here: http://hgdownload.soe.ucsc.edu/goldenPath/mm10/phyloP60way/mm10.60way.phyloP60way/ NCBI Genome Data Viewer also has these data: https://www.ncbi.nlm.nih.gov/genome/gdv/browser/?cfg=NCID_1_26598921_130.14.22.10_9146_1540569262_189464536 For more options, go to Tracks > Configure Tracks > Comparative Genomics

ADD REPLYlink written 2.1 years ago by vkkodali2.2k
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