Question: stringtie :why no novel transcript found?
0
gravatar for Vickey Hu
7 months ago by
Vickey Hu0
Vickey Hu0 wrote:

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As the picture showed, there is no transcript_id with MSTRG as a prefix, so this is odd. The attribute of my gtf is provided with only transcript_id not gene_id nor gene_name.

rna-seq assembly • 276 views
ADD COMMENTlink modified 7 months ago • written 7 months ago by Vickey Hu0

enter image description here

ADD REPLYlink written 7 months ago by Vickey Hu0

it is also odd that when i use -A argument to output the expression level, there is no transcript_id (annotion) assigned to known genes in the second column.enter image description here

ADD REPLYlink written 7 months ago by Vickey Hu0

Which GTF are you using?

ADD REPLYlink written 7 months ago by Kevin Blighe44k
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