Question: stringtie :why no novel transcript found?
0
gravatar for Vickey Hu
11 months ago by
Vickey Hu0
Vickey Hu0 wrote:

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As the picture showed, there is no transcript_id with MSTRG as a prefix, so this is odd. The attribute of my gtf is provided with only transcript_id not gene_id nor gene_name.

rna-seq assembly • 333 views
ADD COMMENTlink modified 11 months ago • written 11 months ago by Vickey Hu0

enter image description here

ADD REPLYlink written 11 months ago by Vickey Hu0

it is also odd that when i use -A argument to output the expression level, there is no transcript_id (annotion) assigned to known genes in the second column.enter image description here

ADD REPLYlink written 11 months ago by Vickey Hu0

Which GTF are you using?

ADD REPLYlink written 11 months ago by Kevin Blighe49k
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