Question: GO enrichemnt results Analysis (Volcano plot)
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gravatar for mayada_mazher1991
11 months ago by
mayada_mazher19910 wrote:

I am trying to make a Go enrichment analysis via gene list containing 30 genes, GO analysis was performed on GO online tool. the results were reported as a txt. format file contained a P value, Fold enrichment . can I plot the value against Fold enrichment to generate a volcano plot?

volcano plot go p value • 527 views
ADD COMMENTlink modified 11 months ago by h.mon27k • written 11 months ago by mayada_mazher19910
1
gravatar for h.mon
11 months ago by
h.mon27k
Brazil
h.mon27k wrote:

You certainly can.

I imagine such a plot could be a bit misleading, because GO categories may be related to each other and you may get a lot of enriched categories, but all related to each other and the same set of genes being responsible for all - you could remove the redundancy somehow, e.g., with Revigo.

ADD COMMENTlink written 11 months ago by h.mon27k
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