Use Sequenza output to run GISTIC2
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5.7 years ago
qxiong1 • 0

From Sequenza output, there are following 13 columns, I am wondering which one I should use for GISTIC2 to calculate Set.CN?

"chromosome" "start.pos" "end.pos" "Bf" "N.BAF" "sd.BAF" "depth.ratio" "N.ratio" "sd.ratio" "CNt" "A" "B" "LPP"
sequencing • 2.5k views
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