Question: Gene symbols - NimbleGen microarray annotation
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gravatar for Adam
3 months ago by
Adam10
Adam10 wrote:

Hello,

I'd like to make some annotation of methylation microarray by NimbleGen. I have preprocessed data from GEO Let's take this one:

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM565262

All I need is gene name/symbol in each row... Unfortunately I didn't find any usefull annotation package or even information about tags (ex. 8076_1_1). Annotation files present in GEO

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL10671

has ID's such as (CHR01FS158402936) however it is also very enigmatic in comprison to Illumina or Affymetrix tags...

Do you have some experience ragarding this type of arrays?

Best Regards, Adam

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