I am currently working on an NGS dataset (~34K snps, 34 individuals, 10 populations, RADseq data) and I need to evaluate how many loci are possibly under selection. To do so I intend to use Lositan and BayeScan. While BayeScan runs with no major problems, Lositan does not even open.
I already have java installed and updated and I have downloaded and installed all dependencies (batik, biopython, etc), but I cannot run the program. I have also searched Biostars, ResearchGate, Google groups, etc, for a solution, but came up short (none of the solutions I have found so far solved the problem).
The error that occurs, specifically, is that once I run the "selwb4.jnpl" application, a java screen pops up but then the error "Cannot launch the application" appears; when I look at the error's details, it says that it is not possible to load the lositan webpage. ( http://popgen.net/soft/lositan/code2/selwb4.jnpl ).
Could anyone help me? Thank you so much in advance!
Very best, Leonardo.