Question: Closest features sort by set distance
gravatar for rbronste
25 days ago by
rbronste230 wrote:

I am using bedops closest features in the following way:

closest-features --dist --no-overlaps --closest Oct4_sorted.bed Nanog_sorted.bed > test.bed

I would just like to do one additional thing which is to sort by nearest to farthest feature, wondering if I should just use standard sort on the last column or if there is a better way through bedops? Maybe to even just limit output to elements within 1kb of one another? I guess starting from left to right in orientation to initial feature. Both would be great to do, thanks!

intervals bedops bed bedtools • 103 views
ADD COMMENTlink written 25 days ago by rbronste230
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1571 users visited in the last hour