I have a bunch of designed protein sequences and I want to assess the quality of their sequence and structure.
what are the best methods of analyzing an amino acid sequence? how to validate it as a native-like protein?
and also after predicting their structure, what are the best ways to analyze the 3D structure of proteins?
Actually, I want to know how good and valid are my designed sequences?
criteria which can validate amino acid sequences and structures both chemically and biologically.