dN/dS ratio from .vcf file
0
0
Entering edit mode
5.6 years ago

Hi

I have 6 .vcf files corresponding to 6 samples.

I would like to find dN/dS ratio using these .vcf files but most approaches to this (whatever I could find) were MSA based.

Anyone can provide me a way to get this out of my .vcf file.

synonmous non-synomous mutation • 3.5k views
ADD COMMENT
0
Entering edit mode

You might try SNPgenie

ADD REPLY
0
Entering edit mode

Hi The SNPgenie doesn't work these days. It keeps on giving segmentation fault. Can you suggest another tool?

ADD REPLY

Login before adding your answer.

Traffic: 1426 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6