Question: PLINK Error: No valid entries in --score file.
4 months ago by
Cindy • 20
Cindy • 20 wrote:
When I use plink to run
--score function I got an Error:
No valid entries in --score file.
PLINK v1.90b5.3 64-bit (21 Feb 2018) Options in effect: --bfile all --out PRS --score riskProfile.txt Random number seed: 1543012864 32199 MB RAM detected; reserving 16099 MB for main workspace. Allocated 906 MB successfully, after larger attempt(s) failed. 274205 variants loaded from .bim file. 7959 people (6370 males, 1589 females) loaded from .fam. Using 1 thread (no multithreaded calculations invoked). Before main variant filters, 7959 founders and 0 nonfounders present. Calculating allele frequencies... done. Total genotyping rate is 0.970417. 274205 variants and 7959 people pass filters and QC. Note: No phenotypes present. Error: No valid entries in --score file.
I have checked the format of score file, it's like the following, and works before. I don't know what's wrong with the code, please help, Thanks
rs182786950 C -0.666783 rs3020682 G 0.127013 rs2379073 T 0.138857 rs10904559 T 0.0916695 rs34166011 G 0.213143
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