Question: VCFTools - Writing 012 matrix files ... Error: Could not open temporary file.
0
gravatar for jmounger
18 months ago by
jmounger0
jmounger0 wrote:

Hi,

I'm trying to make a 012 matrix using VCFTools using these parameters:

--vcf /filepath/snp.vcf
--012
--out output_geno.vcf

but I keep receiving this error, and I'm not sure how to resolve the issue:

After filtering, kept 287 out of 287 Individuals Writing 012 matrix files ... Error: Could not open temporary file.

Any help is greatly appreciated!

snp • 895 views
ADD COMMENTlink modified 15 months ago by epipar10 • written 18 months ago by jmounger0
1

Do you have write permission to the current directory?

ADD REPLYlink written 18 months ago by WouterDeCoster43k
1
gravatar for epipar
15 months ago by
epipar10
epipar10 wrote:

Try increasing the size of the temporary folder

ulimit -n 3000

ADD COMMENTlink written 15 months ago by epipar10
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