Question: The maker annotation is still running but the index log shows that everything is finished, someone can help me?
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gravatar for sebas.saeu
11 months ago by
sebas.saeu0
sebas.saeu0 wrote:

I am running the last round in Maker for the annotation of my genome with trained Augustus, SNAP and tRNAscan. The process has advanced well but it has taken a while. I have checked the final_master_datastore_index.log file (final is the name of the round) and shows that all the chromosomes and sequences have ended without any error, my concern now is because Maker is still running and I do not know if can I stop it or not. Does anyone have an idea of what may be happening?

Thank you in advance!

software annotation genome • 310 views
ADD COMMENTlink modified 11 months ago • written 11 months ago by sebas.saeu0
1

I have edited your title. Your question is not more urgent than others.

ADD REPLYlink written 11 months ago by WouterDeCoster41k

Yes, indeed sorry about that, but also I'm still paying the computational time for my analysis, so for that I posted as urgent in order to try to solve it ASAP. Thank you anyway, I accept your change.

ADD REPLYlink written 11 months ago by sebas.saeu0

Can you check if the process is still working, using the (h)top command?

ADD REPLYlink written 11 months ago by WouterDeCoster41k

Maker still running

Yes, the process is still running on screen and in htop the process is active using all the cores (however are not a full use of the cores as at the start)

ADD REPLYlink written 11 months ago by sebas.saeu0
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