I have the list of LncRNAs of interest and their coordinates in BED format. I am interested in identifying the protein coding genes that are 300kb upstream and 300kb downstream of each of those LncRNAs. The genome annotation of lncRNA is gencode 27. I would like to how I can find the upstream/downstream genes? The easiest way I can think is table browser in UCSC browser.
But I am not sure how. Please help with this.
Thanks for your time.