Question: Mouse strain specific gtf files
0
gravatar for cap76
11 weeks ago by
cap7620
cap7620 wrote:

I'm looking to do alignment to multiple mouse strains (genetic contributions from different strains DBA/2, C57BL/6, C3H). The current plan is to merge the various genomes (and gtf files) to figure out contribution from each of the strains.

So the question is, are there different gtf files for the difference strains? I've managed to locate the genomes themselves, but have not managed to locate the gtf files.

Second question is, is there a better way of doing this?

rna-seq mouse • 153 views
ADD COMMENTlink modified 10 weeks ago • written 11 weeks ago by cap7620
3
gravatar for cap76
10 weeks ago by
cap7620
cap7620 wrote:

Well that was a silly question, seems gtf files are freely available from ENSEMBL ( https://www.ensembl.org/info/data/ftp/index.html ). Think this can be considered closed.

ADD COMMENTlink modified 10 weeks ago by ATpoint13k • written 10 weeks ago by cap7620
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