Understanding LD with tassel results
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Entering edit mode
2.4 years ago

Hi

Can some please help me to understand how to interpret the results that i get from a LD matrix generated by Tassel, technically I get 17 columns with the next headers:

Locus1  Position1   Site1   NumberOfStates1 States1 Frequency1  Locus2  Position2   Site2   NumberOfStates2 States2 Frequency2  Dist_bp R^2 DPrime  pDiseq  N

But dont know what each column mean.

In advance, thank you! :)

GBS LD linkage disequilibrium tassel GWAS • 1.5k views
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Entering edit mode
3 months ago

Hello,

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