Question: forgi for plotting 2D RNA structure
0
gravatar for galchenkova.mari
4 months ago by
galchenkova.mari0 wrote:

Hi, everyone!

I need some help with forgi library for visualisation of RNA secondary structure.

I'd like from dot-bracket notation with known RNA sequence to plot 2D graph like that you can find here - https://viennarna.github.io/forgi/graph_tutorial.html.

If there any other possibilities to plot it in real-time (for instance, in jupyter notebook avoiding any crossing external scripts), I will be very thankful to learn them!

Thank you in advance

ADD COMMENTlink modified 4 months ago by Pierre Lindenbaum119k • written 4 months ago by galchenkova.mari0

Hello galchenkova.mari!

It appears that your post has been cross-posted to another site: https://bioinformatics.stackexchange.com/questions/5642

This is typically not recommended as it runs the risk of annoying people in both communities.

ADD REPLYlink written 4 months ago by Pierre Lindenbaum119k

oh thanks!

I don't know that

ADD REPLYlink written 4 months ago by galchenkova.mari0
0
gravatar for Pierre Lindenbaum
4 months ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum119k wrote:

(no tested)

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5459502/

JNSViewer—A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures

enter image description here

ADD COMMENTlink written 4 months ago by Pierre Lindenbaum119k
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