Question: RSEM with STAR aligment
7 months ago by
prabin.dm • 160
prabin.dm • 160 wrote:
I have single-end fastq.gz files.
when I run RSEM with
--gzipped-read-file it says invalid number of cammands and when i dont use it, it says `FATAL ERROR, exiting. What should I do?
rsem-calculate-expression --star -star-path /share/pkg/star/2.5.3a -p 4 EH_25_data/EH025x045_L001/L001_R1_001.fastq.gz src_eh/rsem-ref/ref ./EH_25
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