Question: RSEM with STAR aligment
2
gravatar for prabin.dm
7 months ago by
prabin.dm160
USA/Amherst/Umass
prabin.dm160 wrote:

I have single-end fastq.gz files.

when I run RSEM with --gzipped-read-file it says invalid number of cammands and when i dont use it, it says `FATAL ERROR, exiting. What should I do?

rsem-calculate-expression --star -star-path /share/pkg/star/2.5.3a -p 4 EH_25_data/EH025x045_L001/L001_R1_001.fastq.gz src_eh/rsem-ref/ref ./EH_25
rsem star • 484 views
ADD COMMENTlink modified 4 months ago by Mohammad Marhabaie10 • written 7 months ago by prabin.dm160
1
gravatar for Mohammad Marhabaie
4 months ago by
United States
Mohammad Marhabaie10 wrote:

Use --star-gzipped-read-file instead of --gzipped-read-file !

ADD COMMENTlink written 4 months ago by Mohammad Marhabaie10
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